Insertion junction: CLIP2.012642_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.012642
Chromosome:chromosome 4
Location:3275496
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g226750 (1 of 10) PTHR31867:SF1 - EXPANSIN-A1-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GACCCACTTGACCTGTCGCTGGAAGCGCTCTCATCAATGTTGTCCTGCCT
Internal bar code:TACATCGGTGGTAAAGCTTTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2387
LEAP-Seq percent confirming:97.561
LEAP-Seq n confirming:40
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:41

Suggested primers for confirmation by PCR

Suggested primer 1:AAATGCGCACCCATCCAGTA
Suggested primer 2:CGACATGCAGCACTTCGATG