Insertion junction: CLIP2.012742_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.012742
Chromosome:chromosome 3
Location:5203274
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g181600 (1 of 1) PF10561 - Uncharacterised protein family UPF0565 (UPF0565) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCCCACGACCGTGGTGTCTGCGGGCCAGGCCTGCTTCGGCAACTTCATT
Internal bar code:TATCGTACAATGGGAAATAGAA

Confirmation - LEAP-Seq

LEAP-Seq distance:1540
LEAP-Seq percent confirming:40.0
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:18
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:CAGCTACGGGCAAAGTACCA
Suggested primer 2:TGTCACACACTCTAACGCCC