Insertion junction: CLIP2.012802_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.012802
Chromosome:chromosome 7
Location:1161294
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g321000 CYG14 (1 of 1) PF00211//PF01590 - Adenylate and Guanylate cyclase catalytic domain (Guanylate_cyc) // GAF domain (GAF); Adenylate/guanylate cyclase CDS
Cre07.g321050 (1 of 1) PTHR11772//PTHR11772:SF3 - ASPARAGINE SYNTHETASE // ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1 5'UTR_intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGAGTGCCAGCGCGTTGATGGCTCGGCCGTGGCGGTGGTACAGGCCCCCG
Internal bar code:AGGTGGATTCACCGGGGTTTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1605
LEAP-Seq percent confirming:86.3636
LEAP-Seq n confirming:38
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:44

Suggested primers for confirmation by PCR

Suggested primer 1:CAAACCACGAGTGCAAGGTG
Suggested primer 2:ACCGTGTCAGAAGGAAGCAG