Insertion junction: CLIP2.012956_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.012956
Chromosome:chromosome 9
Location:1101975
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g401750 (1 of 3) PTHR10696 - GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED; Similar to conserved hypothetical protein in bacteria intron
lncRNA_TCONS_00140390 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GACCCTGTTAGAGCCAGCTGCTGGGCTGGCGCACTTGCTCACGTCCCGGG
Internal bar code:CGCTTCTCCTATCTGTTGGAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:482
LEAP-Seq percent confirming:94.1176
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:CAAACACGCACCTGTCTGTG
Suggested primer 2:ATCGTACGCGTGTATGGTCC