Insertion junction: CLIP2.012967_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.012967
Chromosome:chromosome 1
Location:1439511
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g007651 PUS10 (1 of 1) 5.4.99.27 - tRNA pseudouridine(13) synthase / tRNA Psi(13) synthase; RNA pseudouridine synthase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGCCCGGCCCCGCACCGCTGCACCTCCCGCGCCTCACCTCCCTGCCTACC
Internal bar code:TCCCCTAGTTGAGTTGTCGCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:354
LEAP-Seq percent confirming:86.1111
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:36

Suggested primers for confirmation by PCR

Suggested primer 1:GCTCTTCCCATGGTTCCCAA
Suggested primer 2:AGCGCGCGTGTATGTGTATA