Insertion junction: CLIP2.013175_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.013175
Chromosome:chromosome 2
Location:4141987
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g800224 CDS
lncRNA_TCONS_00041505 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATGACCGTATTCCAATAATGTGCGGCTGTTACTGCCCTGATACTGCCGG
Internal bar code:GGGAGGGGAGTTGAATGGCTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1636
LEAP-Seq percent confirming:90.9091
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:ACCCTGGGGCATCTAGATGT
Suggested primer 2:ATTGGGGGCTATGGGTTGTG