Insertion junction: CLIP2.013220_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.013220
Chromosome:chromosome 3
Location:2312517
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g157900 (1 of 1) PTHR18937//PTHR18937:SF162 - STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER // SUBFAMILY NOT NAMED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCCATCCTGCCAAAGCATTGCATAGAAGGGCACGAATTAGCTGCTGTCC
Internal bar code:TAGGGACAGCGGATTTAGCCGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1593
LEAP-Seq percent confirming:64.0
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:CAAGTGTCGTATCGCAAGCG
Suggested primer 2:CGCAGCAATGAACCCTATGC