Insertion junction: CLIP2.013400_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.013400
Chromosome:chromosome 10
Location:4788062
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g452950 TRP1 Transient receptor potential ion channel protein; (1 of 1) PTHR10117:SF46 - TRANSIENT-RECEPTOR-POTENTIAL-LIKE PROTEIN intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTCAGGATGGAGGGGGCGGGCCAGCGAGCCATGTTTTCCGACTTCCGACT
Internal bar code:CTCCGTAAAGAGAAACTTTCAA

Confirmation - LEAP-Seq

LEAP-Seq distance:486
LEAP-Seq percent confirming:90.0
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:GGTTAAGCCGTTCATGGGGA
Suggested primer 2:AAACACAGCGACCTGGTAGG