Insertion junction: CLIP2.013583_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.013583
Chromosome:chromosome 10
Location:3751593
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g801159 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGGGGGCCTGCACAGGTGATGCAAGCGTCAGCAGCAAGTTCAACTTCGG
Internal bar code:AATACGTGCTCCGAATACTACG

Confirmation - LEAP-Seq

LEAP-Seq distance:2803
LEAP-Seq percent confirming:80.6202
LEAP-Seq n confirming:104
LEAP-Seq n nonconfirming:25
LEAP-Seq n unique pos:129

Suggested primers for confirmation by PCR

Suggested primer 1:TACCGGCTGCAACATGCTTA
Suggested primer 2:TGTGTGAACGGGATGCTCTC