Insertion junction: CLIP2.013792_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.013792
Chromosome:chromosome 9
Location:2677565
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g391900 TRXH1,TRXH,TRXh1,Chh1,TRX5 (1 of 9) K03671 - thioredoxin 1 (trxA); Thioredoxin h1, cytosolic CDS
Cre09.g801021 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGATGGCGTGAAGGCGGACGACCTAGTGGGCGCCAGCCAGGACAAGCTCA
Internal bar code:ATAAGTAACACTACTGGAACAA

Confirmation - LEAP-Seq

LEAP-Seq distance:564
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:GTGCATTTGACGTGCCTTGT
Suggested primer 2:GCTGGCAAGGTCATCTTCCT