Insertion junction: CLIP2.013949_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.013949
Chromosome:chromosome 16
Location:732989
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g691050 (1 of 1) PF08381 - Transcription factor regulating root and shoot growth via Pin3 (BRX) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACATGCCGAACAGGTTGCCGTCCACCTGCGGGGCGGGGCGTGGGGGTTA
Internal bar code:CGCCAATCGCGCACTGAGACAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1171
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:CTGGTGTCCAGCCCATTCAT
Suggested primer 2:ACCAGCAGACAGGTCAGGTA