Insertion junction: CLIP2.013953_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.013953
Chromosome:plastome
Location:50247
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802285 psbA,ChreCp021,2716969 (1 of 2) K02703 - photosystem II P680 reaction center D1 protein (psbA); photosystem II protein D1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCCAGAAGGTTTTTCCCTTACGGGGATATATTATGAAACAGGATAATCG
Internal bar code:CCGGCGTTTATTGTTTTCCTCA

Confirmation - LEAP-Seq

LEAP-Seq distance:2624
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:TTCGGTCCTTTCGGGGATTC
Suggested primer 2:TCAAATGTCGTCCCCTTCGG