Insertion junction: CLIP2.014060_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.014060
Chromosome:chromosome 11
Location:187072
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g467547 TSX1,GTS1:GLTX Glutamyl/glutaminyl-tRNA synthetase, chloroplast precursor; (1 of 2) 6.1.1.17 - Glutamate--tRNA ligase / Glutamyl-tRNA synthetase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGCTGTTTAGGCGGTCGCCTCCAGTAGGGGCCGTTCGTTGAGGTAGCCT
Internal bar code:AATCCCCGTGCGGATCGAGCAA

Confirmation - LEAP-Seq

LEAP-Seq distance:1350
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:CAGTAGTACTGCTCCTCGCG
Suggested primer 2:CTTCGTCCGCAGTCTTCAGT