Insertion junction: CLIP2.014199_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.014199
Chromosome:chromosome 17
Location:3958378
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g802076 (1 of 1) IPR000104//IPR026847 - Antifreeze protein, type I // Vacuolar protein sorting-associated protein 13 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTTTGGTGTGAGCTCGCTGCAACGACAAGGTTGCAGCTGTGACACTGTC
Internal bar code:CGTATCATGCATATTAGCTGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:2185
LEAP-Seq percent confirming:99.0909
LEAP-Seq n confirming:109
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:110

Suggested primers for confirmation by PCR

Suggested primer 1:ACGGCAAGCTTGTTGTTTCC
Suggested primer 2:CGTTTGATCTGCCCTGACCT