Insertion junction: CLIP2.014248_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.014248
Chromosome:chromosome 8
Location:2547771
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g372900 VFL1 (1 of 21) IPR001611//IPR003591 - Leucine-rich repeat // Leucine-rich repeat, typical subtype; Variable flagella protein 1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGAATGGAGCTCATGACGCACGCGTACACACACCCTCCTTCCCCACCCAA
Internal bar code:AGATGAGTGTGTTAACCTGTGA

Confirmation - LEAP-Seq

LEAP-Seq distance:412
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:ACACACACACACAACGGTCT
Suggested primer 2:TGCAACAAGGCGAAATGGTG