Insertion junction: CLIP2.014306_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.014306
Chromosome:chromosome 7
Location:2619997
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g330300 (1 of 2) K14411 - RNA-binding protein Musashi (MSI) CDS
lncRNA_TCONS_00074821 CDS
lncRNA_TCONS_00075115 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTTTGCTGGCCCGCCACCCTACGGCCCGCCTGGCCCCGGATACCCGCCG
Internal bar code:TAGGGGATCCGATTCTAAAGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:242
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:TTGGTTGGCGAAATTGGCAG
Suggested primer 2:GCAGGTTGAAGCCAAAAGGG