Insertion junction: CLIP2.014426_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.014426
Chromosome:chromosome 3
Location:3484425
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g167200 (1 of 1) PTHR23097//PTHR23097:SF107 - TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER // SUBFAMILY NOT NAMED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACACGGCGTCACTCGCGTACCAGAACCAGGCCCAGGGCAGCGCGACGAG
Internal bar code:CATGCTTTAATTTCAGGTAGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:385
LEAP-Seq percent confirming:81.8182
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:GGTACGAGGTATGTCCAGCG
Suggested primer 2:CGTCGACGAGTCAGTATGGG