Insertion junction: CLIP2.014497_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.014497
Chromosome:chromosome 8
Location:1226358
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g363300 (1 of 1) 2.4.2.1//2.4.2.28 - Purine-nucleoside phosphorylase / PNPase // S-methyl-5'-thioadenosine phosphorylase / MTAPase CDS
Cre08.g363350 (1 of 2) IPR003034//IPR009061 - SAP domain // Putative DNA-binding domain 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCGAAGAGCGGCTTGCCCGGGGCAGGGGGGTCCAGGAGCGTGCTGAGAA
Internal bar code:CGCTTTAGGTGTACGGGCGCGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1761
LEAP-Seq percent confirming:36.6667
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:38
LEAP-Seq n unique pos:60

Suggested primers for confirmation by PCR

Suggested primer 1:CTGAACTCCAGAAGCCAGGG
Suggested primer 2:GAGGAAGTCAAGAGGCACCC