Insertion junction: CLIP2.014512_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.014512
Chromosome:chromosome 1
Location:1433703
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g007651 PUS10 (1 of 1) 5.4.99.27 - tRNA pseudouridine(13) synthase / tRNA Psi(13) synthase; RNA pseudouridine synthase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGGTGTTGCCGCGGCACCGTCACAGGCAGACGCCAACCCCACCCCACTC
Internal bar code:GTTTAGTATCCCGACTCCTCTG

Confirmation - LEAP-Seq

LEAP-Seq distance:958
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:TATCGGACTGCTTCGCGTTT
Suggested primer 2:AAGGGCTACGGTGGTCAATG