Insertion junction: CLIP2.014690_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.014690
Chromosome:chromosome 2
Location:1006023
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g079750 HKR1,HIK,HIK1 Histidine kinase response regulator of two-component system; (1 of 1) IPR000014//IPR001610//IPR001789//IPR003594//IPR003661//IPR004358//IPR005467//IPR011006 - PAS domain // PAC motif // Signal transduction response regulator, receiver domain // Histidine kinase-like ATPase, C-terminal domain // Signal transduction histidine kinase, dimerisation/phosphoacceptor domain // Signal transduction histidine kinase-related protein, C-terminal // Histidine kinase domain // CheY-like superfamily 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCACATCCAATGCCGGGTGCCACCTGCCTCAGTAGCTGCGTCAGCAGCAG
Internal bar code:TTAGGCTTAAATTGGTTTGACG

Confirmation - LEAP-Seq

LEAP-Seq distance:2012
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:GGGTGTGGGAGTTGTAGGTG
Suggested primer 2:CTAGCACGTTCCAGCTTGGA