Insertion junction: CLIP2.015048_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.015048
Chromosome:chromosome 17
Location:3909831
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g727801 (1 of 80) IPR003882 - Pistil-specific extensin-like protein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGCCAGCGTTGCGGTGAGCTGCGGCCTGCGTGGATGGGCTTGTGGAGTGT
Internal bar code:TCGGGGACGACGATTCTAATAT

Confirmation - LEAP-Seq

LEAP-Seq distance:618
LEAP-Seq percent confirming:48.1481
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:CCACCGGTGTATGTGTCACA
Suggested primer 2:CCTGCAAAACTGGGCCTTTC