Insertion junction: CLIP2.015118_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.015118
Chromosome:chromosome 8
Location:2553400
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g372900 VFL1 (1 of 21) IPR001611//IPR003591 - Leucine-rich repeat // Leucine-rich repeat, typical subtype; Variable flagella protein 1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTAGGCGCCATCTTGAGGAGCACTGGAACTCGGGTAGGCATTGTGTGGC
Internal bar code:GAGTGGCACGGTGGGCCGGGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1333
LEAP-Seq percent confirming:53.8462
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:TGATACTGCTGGTGCTGGTG
Suggested primer 2:GGAGCTGTCACTGTCGTTGA