Insertion junction: CLIP2.015252_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.015252
Chromosome:chromosome 9
Location:2684494
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g801022 (1 of 12) IPR011010//IPR013762 - DNA breaking-rejoining enzyme, catalytic core // Integrase-like, catalytic domain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATCGAAACCTGTGAGTTCGCCTCTCGGCACGAACCGTGTCACCGTGCGT
Internal bar code:GAAGCATAGCATGCCAGCAGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:3790
LEAP-Seq percent confirming:32.4675
LEAP-Seq n confirming:25
LEAP-Seq n nonconfirming:52
LEAP-Seq n unique pos:77

Suggested primers for confirmation by PCR

Suggested primer 1:CATGACGTATGCCGCTAGGT
Suggested primer 2:CGGAGATGACGGAGCAGTAC