Insertion junction: CLIP2.015378_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.015378
Chromosome:chromosome 5
Location:3039279
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g231100 (1 of 1) PF00023//PF12796//PF13637 - Ankyrin repeat (Ank) // Ankyrin repeats (3 copies) (Ank_2) // Ankyrin repeats (many copies) (Ank_4) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACGCAGTGCGACCGTCACCTTGTATCACCTTGTATCACGTATCAGGACCG
Internal bar code:AAACGTGTGTGCTCAGGTGGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1648
LEAP-Seq percent confirming:92.0
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:GTTGCCACTTGCCAGTTGAG
Suggested primer 2:AGCACTTCTGCCATCCCTTC