Insertion junction: CLIP2.015380_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.015380
Chromosome:chromosome 17
Location:2677089
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g717050 (1 of 16) IPR003439//IPR003593//IPR013525//IPR027417 - ABC transporter-like // AAA+ ATPase domain // ABC-2 type transporter // P-loop containing nucleoside triphosphate hydrolase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGGAGTAAACACACACACATTGTGCTTTGTTTCCATTGTGCTCTTTAAC
Internal bar code:AGGTGGCCGTAGGCGTCCTATA

Confirmation - LEAP-Seq

LEAP-Seq distance:207
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:GGGTGTTTGCTGTCTGCTTG
Suggested primer 2:GAGGGGGAGGCACTTTGTAC