Insertion junction: CLIP2.015381_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.015381
Chromosome:chromosome 17
Location:2556793
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g716050 (1 of 1) PTHR20953:SF2 - PROTEIN SEEDLING PLASTID DEVELOPMENT 1 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGAGGAGGGAGAGAAGGAGAAGGAGGAGAAGCAGGAGTCCGGCCCGGGCT
Internal bar code:GATATTAAATAGTACGTGCTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:2213
LEAP-Seq percent confirming:76.1905
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:21

Suggested primers for confirmation by PCR

Suggested primer 1:TGCAACAAACACGCACAACA
Suggested primer 2:AAGAAGTTCGTGGAGGGCTG