Insertion junction: CLIP2.015407_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.015407
Chromosome:chromosome 17
Location:2291529
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g713400 HTA31,HTA22,HTA25 Histone H2A; (1 of 30) K11251 - histone H2A (H2A) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCTTACCGCTGAGGTGCTGGAGCTGGCCGGCAACGCCGCTCGCGACAAC
Internal bar code:GGGCAATTCGGGTAGGCTTGAA

Confirmation - LEAP-Seq

LEAP-Seq distance:4111
LEAP-Seq percent confirming:99.0741
LEAP-Seq n confirming:107
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:108

Suggested primers for confirmation by PCR

Suggested primer 1:TTTCTGGGAAGGACCGAAGC
Suggested primer 2:GAGCGGTTGTTTGACCCAAC