Insertion junction: CLIP2.015448_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.015448
Chromosome:chromosome 7
Location:4898838
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g346500 (1 of 7) IPR000104//IPR020683 - Antifreeze protein, type I // Ankyrin repeat-containing domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCAGGTCCGAAGCCAGCTCGCGAATCCGGGTCCGCAGCCCGGATTCGCCC
Internal bar code:CAGCTCGTTAACTTTTGTGAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1114
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:26
LEAP-Seq n unique pos:39

Suggested primers for confirmation by PCR

Suggested primer 1:GAATCCGATTCACATGCGGC
Suggested primer 2:CAGCACATCCCATTCCTCGT