Insertion junction: CLIP2.015549_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.015549
Chromosome:chromosome 9
Location:5589963
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00156541

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACCTCCTCCTCAATACCGCTAGCAACAACAGCAAGCAAACCCCTTCCCG
Internal bar code:TATGCTGCAAACAGTGCTTGCC

Confirmation - LEAP-Seq

LEAP-Seq distance:1899
LEAP-Seq percent confirming:90.0
LEAP-Seq n confirming:36
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:40

Suggested primers for confirmation by PCR

Suggested primer 1:AGGAGGACCTCATACGGCTT
Suggested primer 2:GCAACCGCAGAGAAAAAGCA