Insertion junction: CLIP2.015595_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.015595
Chromosome:chromosome 1
Location:4161441
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g027764 (1 of 11) K03327 - multidrug resistance protein, MATE family (TC.MATE, SLC47A, norM, mdtK, dinF) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGGTAGTTCTTGGCGCCGTAGGCCTGGGGGCGAGGGGAAAGGAGCGGGG
Internal bar code:AGTGGGATCGTCCGATTGAATT

Confirmation - LEAP-Seq

LEAP-Seq distance:1722
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:AAACCTTCCGCATCTCCCTG
Suggested primer 2:GGCTCCACTCACTGGTACAC