Insertion junction: CLIP2.015677_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.015677
Chromosome:chromosome 1
Location:4465488
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g030550 UBX1 (1 of 1) PTHR13020:SF34 - UBX DOMAIN-CONTAINING PROTEIN 4; possible ubiquitin-proteasome pathway protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGCGTGATGAAGTGCCTCACGTGCGGCAAGCCCTGCCGCACGGACGCGG
Internal bar code:CATGGAGGGGCCAATTGTGCTA

Confirmation - LEAP-Seq

LEAP-Seq distance:470
LEAP-Seq percent confirming:92.3077
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:CCCTACCAAGACCTCCGAGA
Suggested primer 2:CACCCGATCGCAAATTCGTC