Insertion junction: CLIP2.015763_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.015763
Chromosome:chromosome 5
Location:3019464
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g800570 CDS
lncRNA_TCONS_00229767 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGTCTTTTATCTCTGCTCTGAATTCAACGATTGATGACTGCTTGGCCAGG
Internal bar code:CGGTCACTTTCCTCAGTCGATA

Confirmation - LEAP-Seq

LEAP-Seq distance:716
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:26
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:AGAGGGGTGGTATGGGGTAC
Suggested primer 2:ACTAGCTCAGTCGGGCAGTA