Insertion junction: CLIP2.015916_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.015916
Chromosome:chromosome 9
Location:5214002
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g406950 (1 of 5) IPR000104//IPR016024 - Antifreeze protein, type I // Armadillo-type fold CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTTGCGGCGGGGGCGGACTGAGGGATTCAGGAGCGGGTCGCGAAGAAGC
Internal bar code:TCACCTCCATTTTACTACTACG

Confirmation - LEAP-Seq

LEAP-Seq distance:1083
LEAP-Seq percent confirming:96.2963
LEAP-Seq n confirming:26
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:AACGGGCCAGGAGCAATAAA
Suggested primer 2:TAACACTCGCACACAGGGAC