Insertion junction: CLIP2.015936_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.015936
Chromosome:chromosome 4
Location:1742902
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g212050 (1 of 2) IPR000104//IPR000253//IPR008984 - Antifreeze protein, type I // Forkhead-associated (FHA) domain // SMAD/FHA domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCAGTGCAATCCTGCAACCGTGCACCCATGCAGCCAGTGCAATCCTGCAA
Internal bar code:GTAATGGATTCTACGATGCCCG

Confirmation - LEAP-Seq

LEAP-Seq distance:716
LEAP-Seq percent confirming:75.0
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:AGGGTTCGGTTTAGCTTGGG
Suggested primer 2:GTAGGCGAGGTGGTGTCATC