Insertion junction: CLIP2.015970_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.015970
Chromosome:plastome
Location:180725
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802330 orf2971,ftsH,ChreCp065,2716962 ATP-dependent zinc metalloprotease; (1 of 752) IPR027417 - P-loop containing nucleoside triphosphate hydrolase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAGCGCAATTTGATTTTTTGAAGCAGTTGGAATACTGTTGCCATGTATCT
Internal bar code:CTAATAATTTGGCTCGCGGCGA

Confirmation - LEAP-Seq

LEAP-Seq distance:291
LEAP-Seq percent confirming:83.3333
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:GTCGTCTTCCTCTTGGTGCA
Suggested primer 2:TCCCAACCGAGAAATACCCT