Insertion junction: CLIP2.016041_4

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.016041
Chromosome:chromosome 2
Location:7480301
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g392505 (1 of 4) PTHR22849//PTHR22849:SF39 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMED 3'UTR
Cre09.g392542 (1 of 1) K11423 - histone-lysine N-methyltransferase SETD2 (SETD2, SET2) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCATTGCGACCGCAGAGGCGCCGACGCCTGCTACGGCCCATCCGGTTGT
Internal bar code:ACACTACGAACGAGCGTCAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1272
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:21

Suggested primers for confirmation by PCR

Suggested primer 1:GCGCACACGTAAAACACACT
Suggested primer 2:TCTAGCTCGCGTGTGTTGTT