Insertion junction: CLIP2.016086_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.016086
Chromosome:chromosome 9
Location:1296881
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g400750 AMT5,AMT1Ea,AMT1E Ammonium transporter; (1 of 8) K03320 - ammonium transporter, Amt family (amt, AMT, MEP) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTCGTCTCGTTTCCCTTCCACACAGATACTCGCACCGGCGCTATATGAA
Internal bar code:GATCGTACCCTTATCATGCTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:759
LEAP-Seq percent confirming:93.75
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:CGCCTTGGGAACACACTTTG
Suggested primer 2:ACCTGCTGTCTACCTCGCTA