Insertion junction: CLIP2.016190_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.016190
Chromosome:chromosome 2
Location:6718322
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g387430 (1 of 274) IPR020683 - Ankyrin repeat-containing domain intron
lncRNA_TCONS_00136874 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCTTTAGGCCACCGTTGCAAGCTCGGCTTGCAGCCACTCCGCCTTCGCA
Internal bar code:CTATATATAATCTCCTTACCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:2348
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:33
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:33

Suggested primers for confirmation by PCR

Suggested primer 1:ATTGGCGGTTACCAGGGAAG
Suggested primer 2:ATTGCGCCGGGTTTGAAATC