Insertion junction: CLIP2.016190_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.016190
Chromosome:chromosome 2
Location:6718325
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g387430 (1 of 274) IPR020683 - Ankyrin repeat-containing domain intron
lncRNA_TCONS_00136874 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTGGAGGTGGTAGCCAAGGCGGCTGATGAGGCGGGGGGCAACATACAGC
Internal bar code:CTATATATAATCTCCTTACCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:4650
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:49
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:49

Suggested primers for confirmation by PCR

Suggested primer 1:ATTGCGCCGGGTTTGAAATC
Suggested primer 2:ATTGGCGGTTACCAGGGAAG