Insertion junction: CLIP2.016240_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.016240
Chromosome:chromosome 9
Location:867433
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g403500 (1 of 1) PF12796//PF13637//PF13920 - Ankyrin repeats (3 copies) (Ank_2) // Ankyrin repeats (many copies) (Ank_4) // Zinc finger, C3HC4 type (RING finger) (zf-C3HC4_3) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCAACTCGCAGTTAGCATGGGTGCCGCCACCTCCCACTCAGACTAACCC
Internal bar code:AAGTTTAGAGCTAAGGTTTGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:2695
LEAP-Seq percent confirming:73.0769
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:CTATGCCGTAAGAGCCCTGG
Suggested primer 2:GCTCGCTCATAAAGTTGCCG