Insertion junction: CLIP2.016240_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.016240
Chromosome:chromosome 9
Location:867435
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g403500 (1 of 1) PF12796//PF13637//PF13920 - Ankyrin repeats (3 copies) (Ank_2) // Ankyrin repeats (many copies) (Ank_4) // Zinc finger, C3HC4 type (RING finger) (zf-C3HC4_3) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AATTCGTCGGGACGCCTCATCTGGAGGGGGGATAGTTGTAGTGCCGTGTT
Internal bar code:AAGTTTAGAGCTAAGGTTTGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:4097
LEAP-Seq percent confirming:87.3786
LEAP-Seq n confirming:90
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:103

Suggested primers for confirmation by PCR

Suggested primer 1:GCTCGCTCATAAAGTTGCCG
Suggested primer 2:CTATGCCGTAAGAGCCCTGG