Insertion junction: CLIP2.016342_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.016342
Chromosome:chromosome 10
Location:1554780
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g428900 RRM9,CGL72 (1 of 1) 2.1.1.226 - 23S rRNA (cytidine(1920)-2'-O)-methyltransferase; Conserved in the Green Lineage CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGTCCAGGCACGCCTTAGCCCTGTTGGCTCTGTACAAGTTGCCATGCTC
Internal bar code:CCCACTTCATTCACCGCCGGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1488
LEAP-Seq percent confirming:73.6842
LEAP-Seq n confirming:42
LEAP-Seq n nonconfirming:15
LEAP-Seq n unique pos:57

Suggested primers for confirmation by PCR

Suggested primer 1:TAGTCACCACTTTGTCCGCC
Suggested primer 2:TGTGCACGATGGAACGAGAA