Insertion junction: CLIP2.016486_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.016486
Chromosome:chromosome 16
Location:737819
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g691050 (1 of 1) PF08381 - Transcription factor regulating root and shoot growth via Pin3 (BRX) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTACAATGGGAGTCCAAGAAGGTGGGGAACCGGCAGCGTGCCGGTAAAC
Internal bar code:AGCAGTCATTCGCGTTCGTGCA

Confirmation - LEAP-Seq

LEAP-Seq distance:1238
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:GGCTGCGGGTGCTTTTTAAA
Suggested primer 2:GAAATTCAGCGCGCTTAGGG