Insertion junction: CLIP2.016489_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.016489
Chromosome:chromosome 17
Location:1637006
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g707650 SNRK2L (1 of 4) PTHR24343//PTHR24343:SF167 - SERINE/THREONINE KINASE // SUBFAMILY NOT NAMED; snRK1 family in Chlamydomonas, subgroup 2 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGCAGCGTCAGTGACAGGCCGAGACCCCCTGCCCACTTCAGCCCACGCG
Internal bar code:TTGTCTAGTTGCGGTTTGTTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:2200
LEAP-Seq percent confirming:94.1176
LEAP-Seq n confirming:32
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:34

Suggested primers for confirmation by PCR

Suggested primer 1:AGGCGCGCAAGAATCAGATA
Suggested primer 2:ACCTGCAATCGGATAGAGCG