Insertion junction: CLIP2.016553_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.016553
Chromosome:chromosome 11
Location:2217575
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g467721 (1 of 1) IPR027446 - Variant surface glycoprotein C-terminal domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACACCCAACACGTTATATGGAAGCGCACACCCCTTCACATAGCTGCCTA
Internal bar code:AGGGTTTGGCTATACCCGTGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:5050
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:88
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:88

Suggested primers for confirmation by PCR

Suggested primer 1:GATAGAGAGCGTGGGAAGCC
Suggested primer 2:GGTCAACGTTTACCGACCCT