Insertion junction: CLIP2.016564_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.016564
Chromosome:chromosome 13
Location:1132608
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g569500 (1 of 3) PTHR10696 - GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED; Similar to conserved hypothetical protein in bacteria 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTTTGGCCATCTGGCAGGTTGCCCAAGCGTGCGGCACAATTGCGCACCA
Internal bar code:ATTCTAGAAACAAATAATTAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:3234
LEAP-Seq percent confirming:98.6301
LEAP-Seq n confirming:72
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:73

Suggested primers for confirmation by PCR

Suggested primer 1:CTGGCTGACTCGTGGTTCTT
Suggested primer 2:TATCGCGTTCGGTGAGGATG