Insertion junction: CLIP2.016578_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.016578
Chromosome:chromosome 14
Location:2648845
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g625450 VTE3 MPBQ/MSBQ methyltransferase, chloroplastic; (1 of 1) 2.1.1.295 - 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase / MPBQ/MSBQ methyltransferase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTAGCCGGTGCCCCCAATGCGAAAGGAGTCGCAACCATGCTGGCGTAGTT
Internal bar code:CAGTGTCTCCGTTAGGATATGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1422
LEAP-Seq percent confirming:97.5
LEAP-Seq n confirming:39
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:40

Suggested primers for confirmation by PCR

Suggested primer 1:TACACCAGCCATTCCCAACC
Suggested primer 2:CAAGATGCATGCCGCTAACC