Insertion junction: CLIP2.016595_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.016595
Chromosome:chromosome 2
Location:7193614
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g800258 CDS
lncRNA_TCONS_00137361 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAATTGCACACTTACGTAAGACCCCCGTAAACGGTCCATACGGTGACAGC
Internal bar code:CCCATGTTCGTGGCATTCTAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2182
LEAP-Seq percent confirming:93.75
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:TCAGTGAGGAGACGTGCAAC
Suggested primer 2:ACTGGGTGTAGTGCTGCATC