Insertion junction: CLIP2.016676_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.016676
Chromosome:chromosome 12
Location:9356271
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g541750 ZPD1 (1 of 1) 1.3.99.30 - Phytoene desaturase (3,4-didehydrolycopene-forming) / 5-step phytoene desaturase; Putative zeta-phytoene desaturase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGATGAGGATGATGCCCCCACCTCTGCTCCAGCTCCCGTGAAGGCGCAA
Internal bar code:AACATTCGGATGCGGATTCAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1726
LEAP-Seq percent confirming:93.75
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:CCAGAGCCGAGCTAGACATG
Suggested primer 2:GGTTCAAGGAAGTCCAGCGA