Insertion junction: CLIP2.016879_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.016879
Chromosome:chromosome 3
Location:3734921
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g169150 (1 of 1) K13161 - heterogeneous nuclear ribonucleoprotein R (HNRNPR) intron
lncRNA_TCONS_00068980 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGGCAGCGGGGGTGGCGGGGGGCAGTGCTGGCAGAACGCATGGCCTTAG
Internal bar code:CGATATGATTATCAATTGACCA

Confirmation - LEAP-Seq

LEAP-Seq distance:294
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:TAACTCCTCCTCCCCATGGG
Suggested primer 2:CCAGCACCACGTTGAGTTTG